Phylogenetic Positioning of a Strongyloides stercoralis Isolate Recovered from a Korean Patient and Comparison with Other Asian Isolates

Article information

Korean J Parasito. 2020;58(6):689-694

Publication date (electronic) : 2020 December 31

doi : https://doi.org/10.3347/kjp.2020.58.6.689

Jaeho Bae^1,†, Mi Jin Jeong^2,†, Dong hoon Shin^3,5, Hyun Woo Kim^4,5, Sung Ho Ahn^4,5, Jun Ho Choi^2,‡, Hak Sun Yu^2,5,

¹Department of Biochemistry, School of Medicine, Pusan National University, Yangsan 50612 Korea

²Department of Parasitology and Tropical Medicine, School of Medicine, Pusan National University, Yangsan 50612 Korea

³Department of Pathology, Pusan National University Yangsan Hospital, Yangsan 50612, Korea

⁴Department of Neurology, Pusan National University Yangsan Hospital, Yangsan 50612, Korea

⁵Research Institute for Convergence of Biomedical Science and Technology, Pusan National University Yangsan Hospital, Yangsan 50612, Korea

^*Corresponding author (hsyu@pusan.ac.kr)

^†

These authors contributed equally to this work.

^‡

present address: Department of Environmental Medical Biology, Institute of Tropical Medicine, and Arthropods of Medical Importance Resource Bank (AMIB), Yonsei University College of Medicine, Seoul 03722, Korea

Received 2020 August 27; Revised 2020 November 4; Accepted 2020 November 4.

Strongyloidiasis is caused by Strongyloides stercoralis and is one of the most neglected tropical diseases in tropical and subtropical regions [1]. Although most patients present as asymptomatic, fatal disseminated strongyloidiasis can arise in immunocompromised patients (immunosuppressive therapy, high-dose steroid therapy, and others) [2,3]. Strongyloides can cause general gastrointestinal symptoms, including diarrhea, nausea and vomiting, abdominal pain, and respiratory symptoms such as cough, dyspnea, and asthma [2,3]. Hyperinfection or disseminated strongyloidiasis can affect several organs, leading to fatal outcomes [4–8].

Recently, molecular phylogeny approaches based on the mitochondria and genome markers in S. stercoralis were used to understand microevolution and the phylo-geographical gene flow of S. stercoralis haplotypes among various endemic areas of the world [9–12]. Nagayasu et al. [10] suggested that 2 distinct genetic lineages of S. stercoralis, referred to as Clade I and Clade II, were detected after 571 isolates were genetically analyzed. Clade I can be found in isolates from humans and dogs in different countries, but the Clade II can be found only in isolates from dogs [10]. Spotin et al. [9] also reported that most isolates from several southeast Asian and east Asian countries can be divided into 2 lineages. They used the cytochrome c oxidase subunit 1 (cox1), which is a well-known evolutionary mitogenome marker, as a genetic marker for accurate determination of the taxonomic status and phylogeny of infection-causing helminths [9].

In Korea, S. trongyloides stercoralis infection has been sporadically reported, with most cases being described in patients with immunodeficiency or during steroid chemotherapy [4,5,13,14]. However, no reports exist on genetic analysis of the Korean isolates. In this study, we report an additional disseminated strongyloidiasis case in a Korean patient and compare the genetic characteristics of this Korean isolate with those of previously reported S. stercoralis isolates from Asia using cox1 gene sequencing and multi-align methods.

A 61-year-old Korean man who was living at Yangsan-si, Kyungsangnam-do and previously diagnosed as having retroperitoneal non-Hodgkin lymphoma stage IV, was admitted to the emergency room at the Pusan National University Hospital with gastric discomfort, complaints of dyspnea, and fever on October 25, 2019. He was under chemotherapy to treat the retroperitoneal lymphoma. After esophagogastroduodenoscopy and colonoscopy analysis, reflux esophagitis was identified as Los Angeles Classification-C and Mallory-Weiss syndrome; further, colitis that may have been caused by infection was detected (Fig. 1). A follow up-abdominal CT performed on November 4 showed diffuse symmetric wall thickening of the colon from the ascending to descending areas, which might have been caused by infectious colitis. Finally, parasite nematode infections were detected through the previously obtained biopsy specimens from the colon and duodenum (Fig. 1). However, the patient had died of bacterial septic shock on November 15, 2019.

Fig. 1

Esophagogastroduodenoscopic views and histology of the biopsied gastroesophageal junction and pyloric antrum tissue demonstrating nematode infection. Reflux esophagitis and Mallory-Weiss syndrome were found, and the erosions extended to the submucosal level (Los Angeles Classification-C). Gastroesophageal junction (A). Pyloric antrum (B). Multiple eggs and larvae of S. stercoralis were detected in the tissue (C–F).

As the general method for stool examination failed to detect filariform larvae, PCR was performed on DNA samples extracted from a formalin-fixed paraffin-embedded gastric tissue block, to identify S. stercoralis. The study was approved by institutional review board of the Pusan National University Yangsan Hospital (IRB No. 05-2020-249). The specific primers and PCR conditions used to identify the S. stercoralis 18S rRNA gene have been previously described: 5′-ATC GTG TCG GTG GAT CAT TC-3′ and 5′-CTA TTA GCG CCA TTT GCA TTC-3′ [15,16]. In order to establish the source of the parasite from a foreign country during international travel by the patient, we performed cox1 gene sequencing and compared the genetic variations with genes from 49 previously reported isolates from foreign countries. cox1 gene amplification was performed with the primers 5′-TGG TTT GGG TAC TAG TTG-3′ and 5′-GAT GAG CTC AAA CTA CAC A-3′, and PCR conditions were optimized based on a previous report [17]. DNA sequencing was performed using the same primers by Cosmo Genetech (Seoul, Korea). The 47 cox1 reference sequences from S. stercoralis and 2 from S. planiceps and Enterobius vermicularis (used as outgroup) were obtained from GenBank (https://www.ncbi.nlm.nih.gov/nucgss). Nucleotide sequences were grouped according to host species [29 human isolates and 19 canid isolates] and regions from where they were isolated [east Asia (Japan, China, and South Korea), southeast Asia (Thailand, Myanmar, Laos, and Cambodia)]. Isolate and reference sequences were used for multiple alignment, and phylogenetic distances were calculated using MEGA, (v. 10.1.8, MEGA software). Phylogenetic trees were constructed using the neighbor-joining method in MEGA.

In this study, we identified S. stercoralis infection from an advanced stage lymphoma patient using histopathologic data and molecular studies. Histopathologic examination revealed abundant inflammatory cells, epithelial cells, and numerous larval nematodes. The larvae were elongated and slender and measured approximately 201 to 280 μm in length and 8 to 14 μm in width (Fig. 1). After 18S rDNA PCR analysis, we obtained a positive band that was amplified to a length of 114 bp for the targeted S. stercoralis gene; the PCR products were confirmed by sequencing analysis (Fig. 2A). For comparison with the other isolates reported from foreign countries, we additionally performed cox1 gene sequencing. S. stercoralis isolate (KS1) from the Korean patient was compared with 47 isolates (28 human isolates and 19 canid isolates) previously reported from foreign countries, using cox1 gene phylogenetic analysis. After PCR amplification, we obtained a target band approximately 509 bp in length for cox1 (Fig. 2B). Fig. 3 shows that the phylogenetic tree could clearly be divided into 5 different groups according to hosts and regions. KS1 (GenBank No. MT932865) was the most closely related with the Chinese isolates in terms of genetic distance (Group IV). Japanese isolates were divided into 3 different groups; the genetic distances between KS1 and the Japanese groups were longer than those between KS1 and the Chinese isolates.

Fig. 2

Agarose gel electrophoresis of PCR products of S. stercoralis KS1. (A) 18S rDNA partial PCR product (arrow, 114 bp). (B) cox1 partial PCR product (arrow, 509 bp; M, 1-kb ladder).

Fig. 3

Phylogenetic tree of Strongyloides stercoralis isolates generated using cox1 partial gene sequences. Genetic relationship among S. stercoralis KS1 (MT932865, bolded) were inferred based on phylogenetic analysis using their cox1 sequences along with 47 corresponding reference sequences. A phylogenetic tree was constructed by neighbor-joining method using MEGA (v. 10.1.8). Reference sequences are named by their GenBank accession numbers (Black string, human isolate; Blue string, dog isolate).

Analysis of a recent strongyloidiasis case report in Korea uncovered a generally complex medical history, such as, consuming or injecting steroid drugs or chronic wasting diseases. The immune function in all patients appeared to be significantly lowered [6,13,14,18]. As the patient’s immune function continues to decline, the infection becomes increasingly severe (hyperinfection or disseminated strongyloidiasis). One of the best methods for the diagnosis of Strongyloides infection is the detection of larva via stool examination. Rhabditoid (L1) and filariform (L3) are 2 common types of S. stercoralis larvae, and their sizes and morphological features are different. Filariform larvae are of a greater size and have a longer esophagus than rhabditoid larvae and have a unique tail with a notched appearance [2,18]. In this study, we measured the length of the larva (201–280 μm length), but we could not observe notched tails from the histopathologic results. It was very difficult to accurately observe the size and shape of the parasite while reviewing pathological tissue slides.

We sought to determine the genetic origin of the S. stercoralis KS1 isolate to evaluate whether it was imported from a foreign country or originated in Korea. In order to address this issue, we carried out phylogenetic studies via cox1 gene-sequencing analysis on other isolates from foreign countries. Fig. 3 shows that all the isolates are classified into 5 groups. There is no regional specificity between countries from East Asia and those from Southern-East Asia. KS1 was grouped in the canid isolates from Japan named Group IV (Fig. 3). Strongyloidiasis could be a zoonotic infection; phylogenetic analysis revealed that humans and dogs from the same community share an S. stercoralis strain, suggesting a potential role for dogs in the transmission of this parasite [1,19]. Spotin et al. (2019) [9] analyzed the genetic variability of S. stercoralis using meta-analysis methods, and they identified 4 distinct geographical haplotypes from 106 human isolates and 48 canid isolates. Their haplotype network data showed that haplogroup IV originated from Cambodian dogs and had not zoonotically adapted to infect humans. Nagayasu et al. (2017) [10] also suggested that S. stercoralis has 2 distinct lineages globally, and one group of parasites was isolated from both humans and dogs in different countries (Clade I), while another group of parasites was found exclusively in dogs, indicating that this group had not adapted to infect humans (Clade II).

In this study, a limitation associated with the interpretation of the phylogenetic results was that only one Korean isolate was used for analysis. Unfortunately, we could not find any genetic information regarding S. stercoralis Korean isolates (except KS1) in the GenBank system. Although we do not have adequate information, results suggested that strongyloidiasis in South Korea was more likely to be a zoonotic infection; evidence from phylogenetic analysis revealed that humans and dogs from the same community share an S. stercoralis strain, suggesting a potential role for dogs in the transmission of this parasite.