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"high resolution melting analysis"

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"high resolution melting analysis"

Original Articles
Molecular Differentiation of Opisthorchis viverrini and Clonorchis sinensis Eggs by Multiplex Real-Time PCR with High Resolution Melting Analysis
Worasak Kaewkong, Pewpan M. Intapan, Oranuch Sanpool, Penchom Janwan, Tongjit Thanchomnang, Porntip Laummaunwai, Viraphong Lulitanond, Pham Ngoc Doanh, Wanchai Maleewong
Korean J Parasitol 2013;51(6):689-694.
Published online December 31, 2013
DOI: https://doi.org/10.3347/kjp.2013.51.6.689

Opisthorchis viverrini and Clonorchis sinensis are parasites known to be carcinogenic and causative agents of cholangiocarcinoma in Asia. The standard method for diagnosis for those parasite infections is stool examination to detect parasite eggs. However, the method has low sensitivity, and eggs of O. viverrini and C. sinensis are difficult to distinguish from each other and from those of some other trematodes. Here, we report a multiplex real-time PCR coupled with high resolution melting (HRM) analysis for the differentiation of O. viverrini and C. sinensis eggs in fecal samples. Using 2 pairs of species-specific primers, DNA sequences from a portion of the mitochondrial NADH dehydrogenase subunit 2 (nad 2) gene, were amplified to generate 209 and 165 bp products for O. viverrini and C. sinensis, respectively. The distinct characteristics of HRM patterns were analyzed, and the melting temperatures peaked at 82.4±0.09℃ and 85.9±0.08℃ for O. viverrini and C. sinensis, respectively. This technique was able to detect as few as 1 egg of O. viverrini and 2 eggs of C. sinensis in a 150 mg fecal sample, which is equivalent to 7 and 14 eggs per gram of feces, respectively. The method is species-specific, rapid, simple, and does not require fluorescent probes or post-PCR processing for discrimination of eggs of the 2 species. It offers a new tool for differentiation and detection of Asian liver fluke infections in stool specimens.

Citations

Citations to this article as recorded by  Crossref logo
  • Multiparasitism in Spain in a Korean Visiting Friends and Relatives: Case Report and Review of Imported Cases of Clonorchis sinensis in Europe
    Paola Cociancic, Jacklyn Comas, J. Guillermo Esteban
    Clinical Case Reports.2025;[Epub]     CrossRef
  • Study of the population genetic structure of Opisthorchis-like eggs in northern Thailand using mitochondrial genes
    Picha Suwannahitatorn, Mathirut Mungthin, Ittisak Subrungruang, Lakhanawan Charoensuk, Nithikoon Aksorn, Saiwasan Buathong, Krystyna Cwiklinski
    PLOS Neglected Tropical Diseases.2024; 18(8): e0012445.     CrossRef
  • An Approach for Egg Parasite Classification Based on Ensemble Deep Learning
    Narut Butploy, Wanida Kanarkard, Pewpan M. Intapan, Oranuch Sanpool
    Journal of Advanced Computational Intelligence and Intelligent Informatics.2023; 27(6): 1113.     CrossRef
  • Fish and Food-Fatale: Food-borne Trematode Opisthorchis viverrini and Cholangiocarcinoma
    S. Tan, M. Machrumnizar
    Helminthologia.2023; 60(4): 287.     CrossRef
  • Are Melanoides tuberculata and Tarebia granifera (Gastropoda, Thiaridae), suitable first intermediate hosts of Clonorchis sinensis in Vietnam?
    Hung Manh Nguyen, Hien Hoang Van, Loan Thi Ho, Yulia V. Tatonova, Henry Madsen, Xiao-Nong Zhou
    PLOS Neglected Tropical Diseases.2021; 15(1): e0009093.     CrossRef
  • Clonorchis sinensis and clonorchiasis
    Byoung-Kuk Na, Jhang Ho Pak, Sung-Jong Hong
    Acta Tropica.2020; 203: 105309.     CrossRef
  • Serodiagnostic antigens of Clonorchis sinensis identified and evaluated by high-throughput proteogenomics
    Pyo Yun Cho, Ji-Yun Lee, Tae Im Kim, Jin-Ho Song, Sung-Jong Hong, Won Gi Yoo, Takafumi Tsuboi, Kwon-Soo Ha, Jae-Wan Jung, Satoru Takeo, Eun-Taek Han, Banchob Sripa, Sung-Tae Hong, Jong-Yil Chai, Ho-Woo Nam, Jhang Ho Pak, Tong-Soo Kim, Krystyna Cwiklinski
    PLOS Neglected Tropical Diseases.2020; 14(12): e0008998.     CrossRef
  • Clonorchiasis sinensis detected by laparoscopic exploration of biliary tracts in two patients with obstructive jaundice
    Xialei Liu, Genglong Zhu, Chaonong Cai, Zhiyue Lv, Jian Li
    BMC Infectious Diseases.2019;[Epub]     CrossRef
  • Development of Conventional Multiplex PCR: A Rapid Technique for Simultaneous Detection of Soil-Transmitted Helminths
    Vivornpun Sanprasert, Ruthairat Kerdkaew, Siriporn Srirungruang, Sarit Charuchaibovorn, Kobpat Phadungsaksawasdi, Surang Nuchprayoon
    Pathogens.2019; 8(3): 152.     CrossRef
  • Performance evaluation of existing immunoassays for Clonorchis sinensis infection in China
    Hong-Mei Li, Men-Bao Qian, Yi-Chao Yang, Zhi-Hua Jiang, Kang Wei, Jia-Xu Chen, Jun-Hu Chen, Ying-Dan Chen, Xiao-Nong Zhou
    Parasites & Vectors.2018;[Epub]     CrossRef
  • Molecular characterization of the unique Mesostephanus appendiculatus (Trematoda: Cyathocotylidae) by small ribosomal RNA from Egypt
    Nasr M. El-Bahy, Eman K. Bazh, Shimaa S. Sorour, Nagwa M. Elhawary
    Parasitology Research.2017; 116(4): 1129.     CrossRef
  • LAMPhimerus: A novel LAMP assay for detecting Amphimerus sp. DNA in human stool samples
    William Cevallos, Pedro Fernández-Soto, Manuel Calvopiña, Cristina Fontecha-Cuenca, Hiromu Sugiyama, Megumi Sato, Julio López Abán, Belén Vicente, Antonio Muro, David Blair
    PLOS Neglected Tropical Diseases.2017; 11(6): e0005672.     CrossRef
  • Molecular discrimination of Opisthorchis-like eggs from residents in a rural community of central Thailand
    Saiwasan Buathong, Saovanee Leelayoova, Mathirut Mungthin, Toon Ruang-areerate, Tawee Naaglor, Picha Suwannahitatorn, Phunlerd Piyaraj, Paanjit Taamasri, Peerapan Tan-ariya, Edoardo Pozio
    PLOS Neglected Tropical Diseases.2017; 11(11): e0006030.     CrossRef
  • Current status ofClonorchis sinensisand clonorchiasis in China
    De-Hua Lai, Xiao-Kun Hong, Bi-Xiu Su, Chi Liang, Geoff Hide, Xiaoli Zhang, Xinbing Yu, Zhao-Rong Lun
    Transactions of The Royal Society of Tropical Medicine and Hygiene.2016; 110(1): 21.     CrossRef
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Molecular Differentiation of Schistosoma japonicum and Schistosoma mekongi by Real-Time PCR with High Resolution Melting Analysis
Amornmas Kongklieng, Worasak Kaewkong, Pewpan M. Intapan, Oranuch Sanpool, Penchom Janwan, Tongjit Thanchomnang, Viraphong Lulitanond, Pusadee Sri-Aroon, Yanin Limpanont, Wanchai Maleewong
Korean J Parasitol 2013;51(6):651-656.
Published online December 31, 2013
DOI: https://doi.org/10.3347/kjp.2013.51.6.651

Human schistosomiasis caused by Schistosoma japonicum and Schistosoma mekongi is a chronic and debilitating helminthic disease still prevalent in several countries of Asia. Due to morphological similarities of cercariae and eggs of these 2 species, microscopic differentiation is difficult. High resolution melting (HRM) real-time PCR is developed as an alternative tool for the detection and differentiation of these 2 species. A primer pair was designed for targeting the 18S ribosomal RNA gene to generate PCR products of 156 base pairs for both species. The melting points of S. japonicum and S. mekongi PCR products were 84.5±0.07℃ and 85.7±0.07℃, respectively. The method permits amplification from a single cercaria or an egg. The HRM real-time PCR is a rapid and simple tool for differentiation of S. japonicum and S. mekongi in the intermediate and final hosts.

Citations

Citations to this article as recorded by  Crossref logo
  • Current advances in serological and molecular diagnosis of Schistosoma mekongi infection
    Adrian Miki C. Macalanda, Atcharaphan Wanlop, Kevin Austin L. Ona, Eloiza May S. Galon, Virak Khieu, Somphou Sayasone, Aya Yajima, Jose Ma. M. Angeles, Shin-ichiro Kawazu
    Tropical Medicine and Health.2024;[Epub]     CrossRef
  • Molecular Techniques as Alternatives of Diagnostic Tools in China as Schistosomiasis Moving towards Elimination
    Chao Lv, Wangping Deng, Liping Wang, Zhiqiang Qin, Xiaonong Zhou, Jing Xu
    Pathogens.2022; 11(3): 287.     CrossRef
  • Development of a novel real-time polymerase chain reaction assay for the sensitive detection of Schistosoma japonicum in human stool
    Sara Halili, Jessica R. Grant, Nils Pilotte, Catherine A. Gordon, Steven A. Williams, Cinzia Cantacessi
    PLOS Neglected Tropical Diseases.2021; 15(10): e0009877.     CrossRef
  • Establishment and application of a novel fluorescence-based analytical method for the rapid detection of viable bacteria in different samples
    Qiuyue Yin, Maiqian Nie, Zhenjun Diwu, Yuting Zhang, Lei Wang, Dandan Yin, Liancheng Li
    Analytical Methods.2020; 12(31): 3933.     CrossRef
  • Molecular characterization and functional analysis of the Schistosoma mekongi Ca2+-dependent cysteine protease (calpain)
    Salisa Chaimon, Yanin Limpanont, Onrapak Reamtong, Sumate Ampawong, Orawan Phuphisut, Phiraphol Chusongsang, Jiraporn Ruangsittichai, Usa Boonyuen, Dorn Watthanakulpanich, Anthony J. O’Donoghue, Conor R. Caffrey, Poom Adisakwattana
    Parasites & Vectors.2019;[Epub]     CrossRef
  • Rapid detection and identification of four major Schistosoma species by high-resolution melt (HRM) analysis
    Juan Li, Guang-Hui Zhao, RuiQing Lin, David Blair, Hiromu Sugiyama, Xing-Quan Zhu
    Parasitology Research.2015; 114(11): 4225.     CrossRef
  • Detection of Schistosoma mansoni and Schistosoma haematobium by Real-Time PCR with High Resolution Melting Analysis
    Hany Sady, Hesham Al-Mekhlafi, Romano Ngui, Wahib Atroosh, Ahmed Al-Delaimy, Nabil Nasr, Salwa Dawaki, Awatif Abdulsalam, Init Ithoi, Yvonne Lim, Kek Chua, Johari Surin
    International Journal of Molecular Sciences.2015; 16(7): 16085.     CrossRef
  • Bacterial detection: From microscope to smartphone
    Subash C.B. Gopinath, Thean-Hock Tang, Yeng Chen, Marimuthu Citartan, Thangavel Lakshmipriya
    Biosensors and Bioelectronics.2014; 60: 332.     CrossRef
  • 10,173 View
  • 104 Download
  • Crossref