Warning: fopen(/home/virtual/parasitol/journal/upload/ip_log/ip_log_2025-12.txt): failed to open stream: Permission denied in /home/virtual/lib/view_data.php on line 83

Warning: fwrite() expects parameter 1 to be resource, boolean given in /home/virtual/lib/view_data.php on line 84
An Improved PCR-RFLP Assay for Detection and Genotyping of Asymptomatic Giardia lamblia Infection in a Resource-Poor Setting
Skip to main navigation Skip to main content
  • KSPTM
  • E-Submission

PHD : Parasites, Hosts and Diseases

OPEN ACCESS
ABOUT
BROWSE ARTICLES
FOR CONTRIBUTORS

Articles

Original Article

An Improved PCR-RFLP Assay for Detection and Genotyping of Asymptomatic Giardia lamblia Infection in a Resource-Poor Setting

The Korean Journal of Parasitology 2016;54(1):1-8.
Published online: February 26, 2016

1Department of Medical Laboratory Science, College of Applied Medical Sciences, Taif University, Taif 21944, Saudi Arabia

2Department of Medical Parasitology, National Liver Institute, Menoufia University, Shebin El-Koom, Menoufia 23513, Egypt

3Medical Microbiology and Immunology Department, Faculty of Medicine, Menoufia University, Shebin El-Koom, Menoufia 23513, Egypt

*Corresponding author (yousryhawash@gmail.com)
• Received: August 21, 2015   • Revised: October 18, 2015   • Accepted: November 4, 2015

© 2016, Korean Society for Parasitology and Tropical Medicine

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

  • 11,472 Views
  • 167 Download
  • 7 Web of Science
  • 4 Crossref
  • 9 Scopus
next

Citations

Citations to this article as recorded by  Crossref logo
  • A rapid economical multiplex PCR-RFLP method for molecular detection and genotyping of Giardia duodenalis clinical isolates
    Ajanta Ghosal, Sanjib K. Sardar, Tapas Haldar, Akash Prasad, Koushik Das, Seiki Kobayashi, Yumiko Saito-Nakano, Shanta Dutta, Tomoyoshi Nozaki, Sandipan Ganguly
    Diagnostic Microbiology and Infectious Disease.2024; 110(4): 116548.     CrossRef
  • Comparison of ELISA, nested PCR and sequencing and a novel qPCR for detection of Giardia isolates from Jordan
    Nawal Hijjawi, Rongchang Yang, Ma'mon Hatmal, Yasmeen Yassin, Taghrid Mharib, Rami Mukbel, Sameer Alhaj Mahmoud, Abdel-Ellah Al-Shudifat, Una Ryan
    Experimental Parasitology.2018; 185: 23.     CrossRef
  • Methods for the detection of Cryptosporidium and Giardia: From microscopy to nucleic acid based tools in clinical and environmental regimes
    Folasade Esther Adeyemo, Gulshan Singh, Poovendhree Reddy, Thor Axel Stenström
    Acta Tropica.2018; 184: 15.     CrossRef
  • High Frequency of Enteric Protozoan, Viral, and Bacterial Potential Pathogens in Community-Acquired Acute Diarrheal Episodes: Evidence Based on Results of Luminex Gastrointestinal Pathogen Panel Assay
    Yousry A. Hawash, Khadiga A. Ismail, Mazen Almehmadi
    The Korean Journal of Parasitology.2017; 55(5): 513.     CrossRef

Download Citation

Download a citation file in RIS format that can be imported by all major citation management software, including EndNote, ProCite, RefWorks, and Reference Manager.

Format:

Include:

An Improved PCR-RFLP Assay for Detection and Genotyping of Asymptomatic Giardia lamblia Infection in a Resource-Poor Setting
Korean J Parasitol. 2016;54(1):1-8.   Published online February 26, 2016
Download Citation

Download a citation file in RIS format that can be imported by all major citation management software, including EndNote, ProCite, RefWorks, and Reference Manager.

Format:
Include:
An Improved PCR-RFLP Assay for Detection and Genotyping of Asymptomatic Giardia lamblia Infection in a Resource-Poor Setting
Korean J Parasitol. 2016;54(1):1-8.   Published online February 26, 2016
Close

Figure

  • 0
  • 1
  • 2
An Improved PCR-RFLP Assay for Detection and Genotyping of Asymptomatic Giardia lamblia Infection in a Resource-Poor Setting
Image Image Image
Fig. 1. The optimum concentration of internal control (IC). M, GeneRuler™ 100 bp DNA marker; lane 1, 7.2 fg; lane 2, 3.6 fg; lane 3, 1.8 fg; lane 4, 0.9 fg; lane 5, 0.4 fg. IC concentration of 0.9-3.6 fg per μl was optimum.
Fig. 2. The lower detection limit (LDL) of PCR assay using 3 kinds of DNA samples of various purities. (A) Serial dilutions of recombinant plasmid DNA. Lane 1, 50 pg/reaction; lane 2, 0.5 pg; lane 3, 50 fg; lane 4, 5 fg; lane 5, 0.5 fg; lane 6, 0.05 fg; lane 7, 0.005 fg. (B-left) Serial dilutions of genomic DNA sample of Giardia WB strain (assemblage A). Lane 1, 160 pg/reaction; lane 2, 16 pg; lane 3, 1.6 pg; lane 4, 0.16 pg; lane 5, 16 fg; (B-right) Serial dilutions of genomic DNA sample of Giardia GS strain (assemblage B). Lane 1, 200 pg/reaction; lane 2, 20 pg; lane 3, 2 pg; lane 4, 0.2 pg; lane 5, 20 fg. (C) Serial dilutions of Giardia-negative feces spiked with 105 Giardia cysts. Lane 1, 106 cysts; lane 2, 105 cysts; lane 3, 104 cysts; lane 4, 103 cysts; lane 5, 102 cysts; lane 6, 101 cysts; lane 7, 100 cysts; lane 8; empty. M, GeneRuler™ 100 bp DNA marker.
Fig. 3. PCR amplification products of G. lamblia positive stool samples. M, GeneRuler™ 100 bp DNA marker; lanes 1-4, G. lamblia-positive stool samples; lane 5, empty; lane 6, EC and IC (PCR-positive control); lane 7, EC alone; lane 8, DNA-free master mix (PCR negative control).
An Improved PCR-RFLP Assay for Detection and Genotyping of Asymptomatic Giardia lamblia Infection in a Resource-Poor Setting
Feature EC IC
Cloning vector pCR4®-TOPO pCR4®-TOPO plus gdh insert (455 bp)
Plasmid length ≈ 4.4 kb ≈ 4 kb
G. lamblia strain WB laboratory strain WB laboratory strain
Cloned sequence (bp) Primary target gdh sequence (≈ 450 bp) Modified gdh sequence (≈ 300 bp)
Flanking PCR primers GDHeF and GDHiR GDHeF and GDHiR
E. coli strain (storage) Top10 DH5α
Antibiotics used for colony selection Ampicillin Ampicillin or erythromycin
gdh copy number per 1 ng of plasmid DNA ≈ 2.11 × 108 ≈ 2.1 × 108
HindIII restriction digestion NA One band of ≈ 4 kb
Test Diagnostic performance parameters
No. of false positive No. of false negative Sensitivity
Specificity
PPV
NPV
% 95% CI % 95% CI % 95% CI % 95% CI
PCR assay 0 3a 93.4 82.0-98.5 100 92.0-100 100 91.7-100 93.7 82.7-98.6
Test PCR assay results
Agreements (%)
Kappa (κ) test 95% CI
Positive (No=28) Negative (No=444) Prevalence (5.9%) PPA NPA Overall
Microscopy 17 455 3.6% 60.7 100 97.7 κ = 0.745 95% CI = [0.60-0.88]
RIDA® Quick kit 25a 447 5.2% 85.7 99.7 98.9 κ = 0.900 95% CI = [0.81-0.98]
Reference PCR 29 443 6.1% 96.5 100 99.7 κ = 0.981 95% CI = [0.94-1.00]
Table 1. Important features of external control (EC) and internal control (IC) plasmids constructed in the study

NA, not applicable.

Table 2. Diagnostic performance parameters of PCR assay using 91 control fecal samples against a nominated composite gold standard test comprising microscopy, immunoassay, and a reference PCR assay

CI, 95% confidence intervals; PPV, positive predictive value; NPV, negative predictive value.

These samples were diagnosed as Giardia-negative by microscopy and immunoassay but were positive by the reference PCR.

Table 3. Correlation of results between PCR assay and other tests on 472 clinical stool samples

PPA, positive percent agreement; NPA, negative percent agreement; CI, confidence interval.

One of these samples was Giardia-negative by diagnostic assay and reference PCR.