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Subsets of Inflammatory Cytokine Gene Polymorphisms are Associated with Risk of Carcinogenic Liver Fluke Opisthorchis viverrini-Associated Advanced Periductal Fibrosis and Cholangiocarcinoma
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Original Article

Subsets of Inflammatory Cytokine Gene Polymorphisms are Associated with Risk of Carcinogenic Liver Fluke Opisthorchis viverrini-Associated Advanced Periductal Fibrosis and Cholangiocarcinoma

The Korean Journal of Parasitology 2017;55(3):295-304.
Published online: June 30, 2017

1Biomedical Sciences, Graduate School, Khon Kaen University, Khon Kaen, Thailand

2WHO Collaborating Centre for Research and Control of Opisthorchiasis (Southeast Asian Liver Fluke Disease), Tropical Disease Research Center, Khon Kaen, Thailand

3Department of Pathology, Faculty of Medicine, Khon Kaen University, Khon Kaen, Thailand

4Department of Radiology, Faculty of Medicine, Khon Kaen University, Khon Kaen, Thailand

5Liver Fluke and Cholangiocarcinoma Research Center, and Department of Surgery, Faculty of Medicine, Khon Kaen University, Khon Kaen 40002, Thailand

6Department of Microbiology, Immunology and Tropical Medicine, and Research Center for Neglected Tropical Diseases of Poverty, School of Medicine & Health Sciences, The George Washington University, Washington DC, 20037, USA

*Corresponding author (banchob@kku.ac.th)
• Received: April 18, 2017   • Revised: May 8, 2017   • Accepted: May 11, 2017

Copyright © 2017 by The Korean Society for Parasitology and Tropical Medicine

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Subsets of Inflammatory Cytokine Gene Polymorphisms are Associated with Risk of Carcinogenic Liver Fluke Opisthorchis viverrini-Associated Advanced Periductal Fibrosis and Cholangiocarcinoma
Korean J Parasitol. 2017;55(3):295-304.   Published online June 30, 2017
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Subsets of Inflammatory Cytokine Gene Polymorphisms are Associated with Risk of Carcinogenic Liver Fluke Opisthorchis viverrini-Associated Advanced Periductal Fibrosis and Cholangiocarcinoma
Korean J Parasitol. 2017;55(3):295-304.   Published online June 30, 2017
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Subsets of Inflammatory Cytokine Gene Polymorphisms are Associated with Risk of Carcinogenic Liver Fluke Opisthorchis viverrini-Associated Advanced Periductal Fibrosis and Cholangiocarcinoma
Image Image Image
Fig. 1 Representative amplicons and digestion fragments corresponding to gene polymorphisms. (A) 190 and 114 bp fragments specific for C allele, 304 bp fragment specific for T allele of IL-1b-511C/T polymorphism. (B) 233 bp and 54 bp bands specific for G allele, 122 bp, 111 bp, and 54 bp bands specific for C allele of IL-6-174G/C polymorphism. C) 262 bp fragment specific for T and A alleles of IFN-γ +874T/A polymorphism. (D) 427 bp fragment specific for A allele, 231 and 196 bp fragments specific for G allele of LT-α +252A/G polymorphism. (E) 107 bp fragment specific for A allele, 87 bp fragments specific for G allele of TNF-α −308G/A polymorphism. M, 50 bp DNA marker.
Fig. 2 Net cytokine profile of OvES stimulated PBMCs in APF−, APF+, and CCA patients. The Wilcoxon Matched-paired Signed rank test was used to assess the statistical significance; *P<0.05.
Fig. 3 The net production of IL-1β, IL-6, IFN-γ, LT-α, and TNF-α, and their genotype polymorphisms in APF− (n=200), APF+ (n=200), and CCA patients (n=110). wt, wild type; hetero, heterozygous; var, variant.
Subsets of Inflammatory Cytokine Gene Polymorphisms are Associated with Risk of Carcinogenic Liver Fluke Opisthorchis viverrini-Associated Advanced Periductal Fibrosis and Cholangiocarcinoma

Primer sequences, restriction enzymes, and size of digestion products in the PCR-RFLP and AS-PCR analyses

Gene/SNP rsn wt/var Region Oligonucleotide primers RE Digestion products (bp)
IL-1β/−511 rs16944 C/T Promoter F (5′-TGG CAT TGA TCT GGT TCA TC-3′)
R (5′-GTT TAG GAA TCT TCC CAC TT-3′)
Ava I wt: 190, 114
var: 304
IL-6/−174 rs1800795 G/C Promoter F (5′-GGG CTG CGA TGG AGT CGA AG-3′)
R (5′-TCC CTC ACA CAG GGC TCG-3′)
Nla III wt: 233, 54
var: 122. 111, 54
IFN-γ/+874 rs2430561 T/A Intron 1 Common primer: 5′TCAACAAAGCTGATACTCCA-3′, T allele primer: 5′TTCTTACAACACAAAATCAAATCT-3′, A allele primer: 5′TCTTACAACACAAAATCAAATCA-3′
LT-α/+252 rs909253 A/G intron F (5′-CCG TGC TTC GTG CTT TGG ACT A-3′)
R (5′-AGA CGT TCA GGT GGT GTA AT-3′)
Nco I wt: 427
var: 231, 196
TNF-α/−308 rs1800629 G/A promoter F (5′-TCC TCC CTG CTC CGA TTA CG-3′)
R (5′-AGG CAA TAG GTT TTG AGG GCC-3′)
Nco I wt: 87
var: 107

SNP, Single nucleotide polymorphism; rsn, reference SNP number; wt, wild type; var, variant; RE, restriction enzyme; bp, base pair

Clinicopathological characteristics of cholangiocarcinoma (CCA) patients and non-CCA controls

Demographics APF− (n=200) APF+ (n=200) CCA (n=110)
Sex
 Male (%) 91 (45.5) 92 (46.0) 72 (65.5)
 Female (%) 109 (54.5) 108 (54.0) 38 (34.5)

Age (years)
 Mean±SD 46.8 ±7.7 47.4±7.5 55.9±10.3
 Range 20–60 22–60 40–76

Age (in year; %)
 ≤ 30 6 (3.0) 5 (2.5) 1 (0.9)
 31–40 34 (17.0) 33 (16.5) 5 (4.6)
 41–50 86 (43.0) 83 (41.5) 20 (18.2)
 ≥ 51 74 (37.0) 79 (39.5) 84 (46.4)

Cytokine levels as established in PBMCs pulsed with excretory secretory profcuts of the liver fluke Opisthorchis viverrini and the net cytokine production and genotype polymorphisms

Cytokine levels, pg/ml
Wild type Heterozygous Variant
IL-1β 268.4±47.7 315.4±35.9 303.1±41.1
IL-6 3,973.1±763.2 4,221.6±434.8 4,323.7±440.5
IFN-γ 514.9±140.3 397.5±117.4 239.9±65.2
LT-α 67.3±17.9 187.4±36.0* 153.7±36.7*
TNF-α 362.6±68.8 498.8±127.1 466.7±67.9

Cytokine levels presented as mean±SD;

*P<0.05; n=510.

Comparison of genotypes and allele frequencies for IL-1β, IL-6, IFN-γ, LT-α, and TNF-α in CCA cases and the participants in the APF+ and the APF− groups

Cytokine/Genotype/Allele APF−N(%) APF+N(%) CCA N(%) APF− vs. APF+ APF− vs. CCA APF+ vs. CCA

OR (95% CI) OR (95% CI) OR (95% CI)
IL-1β (−511C/T)
 CC 38 (19.0) 36 (18.0) 18 (16.1) 1 1 1
 CT 100 (50.0) 93 (46.5) 48 (43.6) 0.98 (0.50–1.74) 1.01 (0.50–2.09) 1.03 (0.50–2.14)
 TT 62 (31.0) 71 (35.5) 44 (40.0) 1.20 (0.65–2.22) 1.49 (0.72–3.16) 1.23 (0.59–2.61)
 C 176 (44.0) 165 (41.2) 84 (38.2) 1 1 1
 T 244 (56.0) 235 (58.8) 136 (61.8) 1.02 (0.77–1.36) 1.16 (0.82–1.65) 1.13 (0.80–1.61)

IL-6 (−174G/C)
 GG 112 (56.0) 124 (62.0) 32 (29.1) 1 1 1
 GC 67 (33.5) 59 (29.5) 45 (40.9) 0.79 (0.50–1.25) 2.35 (1.31–4.21)* 2.95 (1.64–5.31)*
 CC 21 (10.5) 17 (8.5) 33 (30.0) 0.73 (0.34–1.53) 5.50 (2.65–11.41)* 7.52 (3.52–16.19)*
 G 291 (72.7) 307 (76.7) 109 (49.5) 1 1 1
 C 109 (27.3) 93 (23.3) 111 (50.5) 0.81(0.58–1.13) 0.26 (0.12–0.52) 3.36 (2.32–4.85)*

IFN-γ (+874T/A)
 TT 61 (30.5) 26 (13.0) 23 (20.9) 1 1 1
 TA 74 (37.0) 98 (49.0) 33 (30.0) 3.10 (1.73–5.61)* 1.18 (0.60–2.34) 0.38 (0.18–0.80)
 AA 65 (32.5) 76 (38.0) 54 (49.1) 2.74 (1.50–5.04)* 2.20 (1.13–4.20)* 0.80 (0.39–1.64)
 T 196 (49.0) 150 (37.5) 79 (35.9) 1 1 1
 A 204 (51.0) 250 (62.5) 141 (64.1) 1.60 (1.19–2.14)* 1.71 (1.20–2.44)* 1.07 (0.75–1.5)

LT-α (+252A/G)
 AA 60 (30.0) 47 (23.5) 24 (21.8) 1 1 1
 AG 74 (37.0) 93 (46.5) 54 (49.1) 1.60 (0.95–2.65) 1.84 (0.97–3.45) 1.17 (0.60–2.16)
 GG 66 (33.0) 60 (30.0) 32 (29.1) 1.16 (0.66–2.01) 1.21 (0.61–2.40) 1.04 (0.51–2.11)
 A 194 (48.5) 187 (46.8) 102 (46.4) 1 1 1
 G 206 (51.5) 213 (53.2) 118 (53.6) 1.07 (0.80–1.43) 1.08 (0.77–1.53) 1.01 (0.72–1.43)

TNF-α (−308G/A)
 GG 34 (17.0) 35 (17.5) 17 (15.5) 1 1 1
 GA 54 (27.0) 46 (23.0) 13 (11.8) 0.82 (0.42–1.60) 0.48 (0.18–1.20) 0.58 (0.22–1.47)
 AA 112 (56.0) 119 (59.5) 80 (72.7) 1.03 (0.58–1.83) 1.42 (0.71–2.92) 1.38 (0.69–2.82)
 G 122 (30.5) 116 (29.0) 47 (21.4) 1 1 1
 A 278 (69.5) 284 (71.0) 173 (78.6) 1.07 (0.78–1.47) 1.61 (1.08–2.43)* 1.50 (1.00–2.26)*

*Significant at P-value<0.05.

Table 1 Primer sequences, restriction enzymes, and size of digestion products in the PCR-RFLP and AS-PCR analyses

SNP, Single nucleotide polymorphism; rsn, reference SNP number; wt, wild type; var, variant; RE, restriction enzyme; bp, base pair

Table 2 Clinicopathological characteristics of cholangiocarcinoma (CCA) patients and non-CCA controls
Table 3 Cytokine levels as established in PBMCs pulsed with excretory secretory profcuts of the liver fluke Opisthorchis viverrini and the net cytokine production and genotype polymorphisms

Cytokine levels presented as mean±SD;

P<0.05; n=510.

Table 4 Comparison of genotypes and allele frequencies for IL-1β, IL-6, IFN-γ, LT-α, and TNF-α in CCA cases and the participants in the APF+ and the APF− groups

Significant at P-value<0.05.