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"Noboru Inoue"

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"Noboru Inoue"

Brief Communication

Development of Loop-Mediated Isothermal Amplification Targeting 18S Ribosomal DNA for Rapid Detection of Azumiobodo hoyamushi (Kinetoplastea)
Su-Min Song, Dinzouna-Boutamba Sylvatrie-Danne, So-Young Joo, Yun Kyung Shin, Hak Sun Yu, Yong-Seok Lee, Ji-Eon Jung, Noboru Inoue, Won Kee Lee, Youn-Kyoung Goo, Dong-Il Chung, Yeonchul Hong
Korean J Parasitol 2014;52(3):305-310.
Published online June 26, 2014
DOI: https://doi.org/10.3347/kjp.2014.52.3.305

Ascidian soft tunic syndrome (AsSTS) caused by Azumiobodo hoyamushi (A. hoyamushi) is a serious aquaculture problem that results in mass mortality of ascidians. Accordingly, the early and accurate detection of A. hoyamushi would contribute substantially to disease management and prevention of transmission. Recently, the loop-mediated isothermal amplification (LAMP) method was adopted for clinical diagnosis of a range of infectious diseases. Here, the authors describe a rapid and efficient LAMP-based method targeting the 18S rDNA gene for detection of A. hoyamushi using ascidian DNA for the diagnosis of AsSTS. A. hoyamushi LAMP assay amplified the DNA of 0.01 parasites per reaction and detected A. hoyamushi in 10 ng of ascidian DNA. To validate A. hoyamushi 18S rDNA LAMP assays, AsSTS-suspected and non-diseased ascidians were examined by microscopy, PCR, and by using the LAMP assay. When PCR was used as a gold standard, the LAMP assay showed good agreement in terms of sensitivity, positive predictive value (PPV), and negative predictive value (NPV). In the present study, a LAMP assay based on directly heat-treated samples was found to be as efficient as DNA extraction using a commercial kit for detecting A. hoyamushi. Taken together, this study shows the devised A. hoyamushi LAMP assay could be used to diagnose AsSTS in a straightforward, sensitive, and specific manner, that it could be used for forecasting, surveillance, and quarantine of AsSTS.

Citations

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  • Measurement of Tunic Hardness in an Edible Ascidian, Halocynthia roretzi, with Remarks on Soft Tunic Syndrome
    Euichi Hirose, Kei Nakayama, Tetsuya Yanagida, Akatsuki Nawata, Shin-Ichi Kitamura
    Zoological Science.2018; 35(6): 548.     CrossRef
  • 9,455 View
  • 92 Download
  • 2 Web of Science
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Original Article

Loop-Mediated Isothermal Amplification Targeting 18S Ribosomal DNA for Rapid Detection of Acanthamoeba
Hye-Won Yang, Yu-Ran Lee, Noboru Inoue, Bijay Kumar Jha, Dinzouna-Boutamba Sylvatrie Danne, Hong-Kyun Kim, Junhun Lee, Youn-Kyoung Goo, Hyun-Hee Kong, Dong-Il Chung, Yeonchul Hong
Korean J Parasitol 2013;51(3):269-277.
Published online June 30, 2013
DOI: https://doi.org/10.3347/kjp.2013.51.3.269

Amoebic keratitis (AK) caused by Acanthamoeba is one of the most serious corneal infections. AK is frequently misdiagnosed initially as viral, bacterial, or fungal keratitis, thus ensuring treatment delays. Accordingly, the early detection of Acanthamoeba would contribute significantly to disease management and selection of an appropriate anti-amoebic therapy. Recently, the loop-mediated isothermal amplification (LAMP) method has been applied to the clinical diagnosis of a range of infectious diseases. Here, we describe a rapid and efficient LAMP-based method targeting Acanthamoeba 18S rDNA gene for the detection of Acanthamoeba using clinical ocular specimens in the diagnosis of AK. Acanthamoeba LAMP assays detected 11 different strains including all AK-associated species. The copy number detection limit for a positive signal was 10 DNA copies of 18S rDNA per reaction. No cross-reactivity with the DNA of fungi or other protozoa was observed. The sensitivity of LAMP assay was higher than those of Nelson primer PCR and JDP primer PCR. In the present study, LAMP assay based on directly heat-treated samples was found to be as efficient at detecting Acanthamoeba as DNA extracted using a commercial kit, whereas PCR was only effective when commercial kit-extracted DNA was used. This study showed that the devised Acanthamoeba LAMP assay could be used to diagnose AK in a simple, sensitive, and specific manner.

Citations

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  • Ultrasensitive and rapid diagnostic tool for detection of Acanthamoeba castellanii
    Susanna Haapanen, Maarit S. Patrikainen, Seppo Parkkila
    Diagnostic Microbiology and Infectious Disease.2023; 107(2): 116014.     CrossRef
  • A simple and visible detection method for the rapid diagnosis of Ustilaginoidea virens in rice seeds by a loop‐mediated isothermal amplification assay
    Wei Wang, Hang Yin, Ning Huang, Cuijing Zhu, Yufei Wang, Xintong Qi, Lu Ma, Yunxin Fan, Yao Yu, Hongsheng Zhang, Yongmei Bao
    Journal of Phytopathology.2021; 169(6): 369.     CrossRef
  • Efficient nested-PCR-based method development for detection and genotype identification of Acanthamoeba from a small volume of aquatic environmental sample
    Tsui-Kang Hsu, Jung-Sheng Chen, Hsin-Chi Tsai, Chi-Wei Tao, Yu-Yin Yang, Ying-Chin Tseng, Yi-Jie Kuo, Dar-Der Ji, Jagat Rathod, Bing-Mu Hsu
    Scientific Reports.2021;[Epub]     CrossRef
  • Development of Visually Improved Loop Mediated Isothermal Amplification for the Diagnosis of Plasmodium vivax Malaria in a Tertiary Hospital in Chandigarh, North India
    Hargobinder Kaur, Rakesh Sehgal, Devendra Bansal, Ali A. Sultan, Ashish Bhalla, Sunit C. Singhi
    The American Journal of Tropical Medicine and Hygiene.2018; 98(5): 1374.     CrossRef
  • Detection of Acanthamoeba spp. in water samples collected from natural water reservoirs, sewages, and pharmaceutical factory drains using LAMP and PCR in China
    Anna Lass, Milena Guerrero, Xiuping Li, Gabriele Karanis, Liqing Ma, Panagiotis Karanis
    Science of The Total Environment.2017; 584-585: 489.     CrossRef
  • Water-borne protozoa parasites: The Latin American perspective
    Félix Manuel Rosado-García, Milena Guerrero-Flórez, Gabriele Karanis, María Del Carmen Hinojosa, Panagiotis Karanis
    International Journal of Hygiene and Environmental Health.2017; 220(5): 783.     CrossRef
  • Evaluation of Loop-mediated Isothermal Amplification Assay for Rapid Diagnosis of Acanthamoeba Keratitis
    Abhishek Mewara, Sumeeta Khurana, Shakila Yoonus, Kirti Megha, Parveen Tanwar, Amit Gupta, Rakesh Sehgal
    Indian Journal of Medical Microbiology.2017; 35(1): 90.     CrossRef
  • Acanthamoeba keratitis: improving the Scottish diagnostic service for the rapid molecular detection of Acanthamoeba species
    Claire Low Alexander, Michael Coyne, Brian Jones, Deepa Anijeet
    Journal of Medical Microbiology .2015; 64(7): 682.     CrossRef
  • Molecular diagnosis in clinical parasitology: When and why?
    Samson SY Wong, Kitty SC Fung, Sandy Chau, Rosana WS Poon, Sally CY Wong, Kwok-Yung Yuen
    Experimental Biology and Medicine.2014; 239(11): 1443.     CrossRef
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  • 96 Download
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Brief Communication
Towards developing a diagnostic regimen for the treatment follow-up of Trypanosoma brucei gambiense
Peter A. Mbati, Kazuko Hirumi, Noboru Inoue, Nanituma H. Situakibanza, Hiroyuki Hirumi
Korean J Parasitol 1999;37(4):289-292.
Published online December 31, 1999
DOI: https://doi.org/10.3347/kjp.1999.37.4.289

BALB/c mice infected with a high virulent strain of Trypanosoma brucei gambiense IL3707 were treated intraperitoneally (ip) with either Melarsoprol (Mel-B) or PSG(+) buffer as controls. The mice were subsequently monitored regularly for parasites by direct microscopic examination of their tail blood or buffy coat and by polymerase chain reaction (PCR). Mel-B was found to be an effective drug for treatment against T.b. gambiense because at the end of the first treatment schedule, all treated mice were negative for parasites even by PCR, while all the control animals were positive. Three of the five Mel-B treated mice, while parasitologically negative, were PCR positive between 53 and 80 days post infection (DPI), indicating that they still harbored an infection. All treated mice were subsequently negative for parasites even by PCR at 88 DPI. A combination of conventional microscopic examination and PCR offers a good prediction of cure following treatment of trypanosomosis.

Citations

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  • Diagnostic Accuracy of PCR in gambiense Sleeping Sickness Diagnosis, Staging and Post-Treatment Follow-Up: A 2-year Longitudinal Study
    Stijn Deborggraeve, Veerle Lejon, Rosine Ali Ekangu, Dieudonné Mumba Ngoyi, Patient Pati Pyana, Médard Ilunga, Jean Pierre Mulunda, Philippe Büscher, Serap Aksoy
    PLoS Neglected Tropical Diseases.2011; 5(2): e972.     CrossRef
  • Novel Markers for Treatment Outcome in Late‐StageTrypanosoma brucei gambienseTrypanosomiasis
    Veerle Lejon, Isabelle Roger, Dieudonné Mumba Ngoyi, Joris Menten, Jo Robays, Francois X. N’Siesi, Sylvie Bisser, Marleen Boelaert, Philippe Büscher
    Clinical Infectious Diseases.2008; 47(1): 15.     CrossRef
  • 7,446 View
  • 76 Download
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