A. healyi (ATCC#30886) trophozoites, originally isolated from a case of GAE (Moura et al., 1992), were obtained from the American Type Culture Collection (Rockville, Maryland, USA) and were grown axenically at 25°C in PYG (peptone-yeast-glucose) medium (10 g proteose peptone, 10 g yeast extract, 10 ml - 50% glucose, 10 ml - 0.5 M Na₂HPO₄, 10 ml - 0.5 M K₂HPO₄ in 970 ml glass distilled water with the final pH adjusted to 6.5) at 25°C incubator (Sanyo, San Diego, California, USA).

The cDNA used in this study was derived from a previously constructed cDNA library of A. healyi (Kong et al., 2001). Sequences obtained were searched for homology using the Basic Local Alignment Tool X (BLASTX) program at the National Institute for Health. Predicted motifs and secondary structures were obtained from Predictprotein, at the Columbia University Bioinformatics Center. The molecular mass and isoelectric point of AhABP were computed from deduced amino acid residues using the Translate program at the ExPasy Proteomics Server. Protein families and domains were identified using ProSite at the same server. Phylogeny was obtained by aligning actin bundling proteins using CLUSTALX version 1.82 with a low gap penalty.

Total RNA was isolated from trophozoites of A. healyi OC-3A, A. castellanii Castellani and A. castellanii Neff. The probe, a 389 bp sized PCR fragment of the AhABP gene for actin bundling protein in Acanthamoeba healyi (AhABP), was randomly primed with a DIG-dUTP (Roche, Manheim, Germany). Hybridization of membranes was performed using ExpressHyb Hybridization Solution (Clontech, San Jose, California, USA), according to the manufacturer's instructions. Also, a 300 bp fragment of 18s rDNA from Acanthamoeba was derived by PCR method and was used as a loading standard for Northern blot expression levels. The membrane was deprobed and rehybridized with the probe of 18s rDNA as a RNA loading control.

Transfection vectors for transient expression were constructed by ligating AhABP gene into pUb-EGFP expression vector containing an Acanthamoeba ubiquitin promoter (Kong and Pollard, 2002). Figure 1 shows the different expression vectors used in this study, including full-length AhABP cDNA (AhABP-F) and 3 deletion mutants corresponding to the fragments with deleted EF-hands (AhABP ΔEF), deleted actin binding site (AhABP ΔAS), and deleted C-terminus (AhABP ΔCT). Primers including Spe I at the 5' end and an Xba I at the 3' end were designed to amplify cDNA fragments, which were then inserted into pUb-EGFP expression vector behind EGFP.

A. healyi grown to mid log phase were washed with PBS and then resuspended in PYG culture medium. Approximately 4 × 10⁵ cells per well were seeded in a six-well culture plate in 3 ml of PYG medium and incubated overnight at 25°C. At least 4 µg of plasmid DNA was added to PYG medium to a volume of 100 µl, and 20 µl of Superfect transfection reagent (Qiagen, Hilden, Germany) was then added. After incubation for 10 min, 900 µl of PYG medium was added to reaction tubes containing the transfection complexes and this was then pipetted dropwise into the wells. Cells were incubated for 2-3 hr at 25°C, medium was removed, and cells were washed once with PBS. The cells in growth medium were incubated for 24-48 hr at 25°C. Transfection efficiencies were calculated by measuring the percentage of fluorescent cells among transfected cells using a CellQuest 3.2 FACScan (Beckton-Dickinson, Franklin lakes, New Jersey, USA).

Amoeba expressing green fluorescent protein were selected and allowed to adhere to a cell culture dish (BD Falcon, Franklin lakes, New Jersey, USA). The cells were observed under an Olympus IX70 fluorescent microscope equipped with a cooled CCD camera (Roper Scientific, Tucson, Arizona, USA). Alternatively, transfected amoebae were flattened with an agar overlay to observe intracellular structures in detail (Yumura et al., 1984). EGFP fluorescence was achieved using a 500-530 nm band pass filter. Images and time lapse photographs were acquired and analyzed using the Metamorph imaging system (Universal Imaging Corp., West Chester, Pennsylvania, USA).

The actin bundling abilities of recombinant AhABPs were determined using actin-filament cosedimentation assays. AhABP-F and truncated versions of the protein were cleared at 4°C for 30 min at 37,000 × g in a centrifuge (Centrikon, Kontron, Italy) to remove contaminating proteins. High speed actin co-sedimentation assays were performed as previously described (Lim and Fechheimer, 1997). Briefly, 0.2 mM of AhABP-F or each of the truncated constructs and 24 mM of actin (Sigma, Steinheim, Germany) were mixed in a polymerization buffer composed of 20 mM PIPES, pH 7, 50 mM KCl, 50 µM MgCl₂, 1 mM ATP, 0.2 mM DTT, 5 mM EGTA and 0.2 mM CaCl₂ (low conc.) or 5 mM (high conc.) to a final volume of 200 µl. These AhABP/actin mixtures were then incubated for 24 hr at 4°C to allow polymerization and were then centrifuged at 250,000 × g (Beckman TLX-100, Ramsey, Minnesota, USA) for 1 hr at 4°C. Supernatant and pellet fractions were separated and the proteins in each fraction were analyzed by SDS-PAGE. AhABP and actin alone were also centrifuged using the same conditions and loaded as controls.

Negative staining of mixtures of actin and AhABPs was performed as previously described (Fechheimer and Furukawa, 1993). The same amounts of AhABP-Full and actin as used in co-sedimentation assays were prepared and allowed to react in polymerization buffer containing 5 mM CaCl₂. After incubation at 4°C for overnight, a mixture was adsorbed onto a 300-mesh copper grid coated with 0.3% Formvar and carbon for 5 min. The grid was then washed and then stained with 2% uranyl acetate for 2 min. The actin bundles formed by AhABP were visualized under a transmission electron microscope (Hitachi-H 7100, Tokyo, Japan)

The cDNA clone found to be homologous to actin bundling protein was verified to contain a single open reading frame gene consisting of 828 bp. The deduced amino acid sequence of this gene revealed a protein of 275 amino acid residues with a predicted molecular mass of 32,000 Da and an isoelectric point of 5.79. The clone represented the entire coding sequence including the 3' termination codon, which was followed by presumably untranslated sequences and a poly A tail. Based on the results of a homology search, the gene was found to exhibit high similarity of up to 72% with actin bundling proteins of Physarum polycephalum and Dictyostelium discoideum. Phylogenetic analysis demonstrated that AhABP is more closely related to the ABP-46 P. polycephalum and the 34 kDa actin-bundling protein of D. discoideum rather than the actin bundling proteins of other organisms (Fig. 2). AhABP exhibits the characteristic features of actin binding proteins, i.e., phosphorylation sites, 2 structural repeated regions (amino acids 2-39 and 134-167), and 2 putative calcium-binding EF-hands (Fig. 3). Sspro (Pollastri and McLysaght, 2005) predictions of secondary structure indicated a high probability for the occurrence of helixes throughout the sequence and using the program Coils (Lupas, 1997), a 30-amino acid residue (EIRAARLALEEVNKSIKAYEAERYRLTEES) was identified in a coiled-coil domain. Analysis by Prosite (Falquet et al., 2002) of the deduced amino acid sequence found potentially important sites that may transduce information for intracellular signaling pathways, including N-myristoylation, tyrosine kinase phosphorylation, protein kinase C phosphorylation, and casein kinase II phosphorylation.

AhABP was found to contain 2-centrally located EF-hand Ca²⁺ binding sites interposed by a 20-amino acid residue. The predicted calcium binding hands exist as a pair and contain the helix-loop-helix structure sometimes called the calcium-binding loop, which can be recognized by the presence of a consensus sequence. Alignment of EF-hands revealed that the AhABP loops contain the essential sites to bind the calcium atom coordinates x, y, z, -y, -x and z (Fig. 3).

Northern blot analysis was performed to determine the expression of AhABP in different strains of Acanthamoeba, namely A. healyi OC-3A, A. castellanii Neff, and A. castellanii Castellani. Total RNA from these 3 strains showed a single band of approximately 0.8 kb corresponding to the size of the cDNA clone, and thus supported the notion that the cDNA clone is of full length. All Acanthamoeba strains showed detectable levels of AhABP mRNAs, with highest expression in A. healyi (Fig. 4).

The transfection efficiencies of the constructs ranged from 0.5 to 3%. Transfection results showed that EGFP-AhABP-F was localized in cortical cytoplasm, excluding the nucleus and vesicles, but was also present at cell peripheries and in pseudopods (Fig. 5). Fig. 6 shows the localization of AhABP-F as observed in cells undergoing phagocytosis after adding heat-killed yeast cells to transfected amoeba in a microwell dish. EGFP fused AhABP-F accumulated in regions that came in contact with yeast cells and did not diminish even after completely enclosing yeast cells, indicating the presence of AhABP in mature phagosomes. Fig. 7 shows the formation of ellipsoidal inclusions at cellular peripheries expressing AhABP ΔEF, AhABP ΔAS, and AhABP ΔCT. In addition to the accumulation of these aggregates, most cells expressing site-deleted fragments exhibited rounding and membrane blebbing. These results suggest that the regulatory roles of EF-hands, the actin binding site, and the C-terminus are necessary for the proper binding of actin filaments by AhABP. The appearance of these aggregations was not manifested in cells expressing AhABP-F.

Thick bands of the fusion proteins, i.e., 58 kDa for AhABP-F-GST, 51 kDa for AhABP ΔCT-GST, 42 kDa for AhABP ΔAS-GST and 40 kDa for AhABP ΔEF-GST were detected (Fig. 8). AhABP-F and AhABP ΔEF were contained in the soluble fraction, whereas AhABP ΔCT and AhABP ΔAS were insoluble. Truncation of the C-terminal and deletion of the actin binding site may have caused these GST-fusion proteins to become unstable and insoluble.

Using the same conditions used for the co-sedimentation assay of Dictyostelium 34 kDa protein. Approximately 10 µM of free calcium is present in the polymerization buffer containing 5 mM CaCl₂ as described in the Co-sedimentation assay of Dictyostelium (Fechhermer, 1987). As shown in Fig. 9A, recombinant AhABP wild type bound actin in the presence of high (5 mM) and low (0.2 mM) concentration of calcium by co-sedimentation assays, whereas constructs with deleted regions exhibited various binding degrees. For ΔEF and ΔCT, some of the actin remained in the supernatant, whereas in ΔAS, both the fusion protein and actin were present in the supernatant fraction at both low and high calcium concentrations. AhABP-F alone and actin alone also sedimented under the same conditions and were loaded as standards. AhABP-F or actin alone remained in the supernatant fraction and were not sedimented, as shown in Fig. 9B.

To visualize the interaction between AhABP-F and AhABP deletion constructs, mixtures of AhABP and actin were allowed to copolymerize and examined by negative staining electron microscopy (Fig. 10). When the recombinant protein expressing AhABP-F was mixed with actin, actin was organized into large parallel arrays about 0.38 µm thick. The fragments, AhABP ΔEF and AhABP ΔCT formed thinner bundles, suggesting that these deleted sites are important for the formation of parallel actin bundles. Similar result was observe for AhABP ΔAS since the elimination of the actin binding site strongly reduced, but did not completely abolish actin bundling activity, as was indicated by the formation of thin actin filament bundles. These results are in agreement with the binding abilities observed in co-sedimentation assays.